PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012904-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 170aa    MW: 19410.7 Da    PI: 4.712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012904-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE++ l ++v+++G   W  I +  +       R+  ++k++w++
  AHYPO_012904-RA  5 KLKWTPEEEDALREGVNKHGVSKWQVILKDPQfrhilYSRSNIDLKDKWRN 55
                     689***********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.443161IPR017930Myb domain
SuperFamilySSF466894.95E-16260IPR009057Homeodomain-like
SMARTSM007172.9E-8459IPR001005SANT/Myb domain
PfamPF002497.1E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12556IPR009057Homeodomain-like
CDDcd116601.27E-18758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGNPKLKWTP EEEDALREGV NKHGVSKWQV ILKDPQFRHI LYSRSNIDLK DKWRNMNHAK  60
SRPKQNPKSA IQPQKSKEAQ VVGEDEAGAG ADRLKIEKQE KVISSSGEME EEVLAELIAE  120
LRNNNDPEHA QYCKDLEILL EDDQKADEIL AYANEIMDRP LDNYECSDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-23telomere repeat binding factor 3